File:Phosphatidic acid synthesis.svg

Original file(SVG file, nominally 813 × 222 pixels, file size: 27 KB)

Commons-logo.svg This is a file from the Wikimedia Commons. The description on its description page there is shown below.
Commons is a freely licensed media file repository. You can help.

Summary

Description
English: Phosphatidic acid synthesis.
Date
Source Own work
Author Krishnavedala
SVG development
InfoField
 
The SVG code is valid.
 
This vector image was created with LaTeX.
Source code
InfoField

LaTeX code

Source code
\documentclass[12pt,border=5pt,tikz,class=scrartcl,multi=false]{standalone}
\usepackage{times}
\usepackage[T1]{fontenc}
\usepackage[latin1]{inputenc}
\usepackage{mathtools,amssymb,siunitx}
\usepackage{pgfplots}
\pgfplotsset{compat=1.13}
\usepackage{carbohydrates}
\usepackage{gensymb}

\usepackage{chemfig,chemmacros}
\renewcommand*{\familydefault}{\sfdefault}
\renewcommand*\printatom[1]{\ensuremath{\mathsf{#1} } }
\setatomsep{2em}
\setdoublesep{.6ex}
\setarrowdefault{,1,ultra thick}
\setbondstyle{very thick,cap=round}
\definesubmol\nobond{-[,0.2,,,draw=none]}

\usetikzlibrary{positioning,calc,arrows,fit,backgrounds,decorations,shapes,matrix}

\makeatletter
\pgfdeclaredecoration{ddbond}{initial}
{
	\state{initial}[width=4pt]
	{
		\pgfpathlineto{\pgfpoint{4pt}{0pt} }
		\pgfpathmoveto{\pgfpoint{2pt}{2pt} }
		\pgfpathlineto{\pgfpoint{4pt}{2pt} }
		\pgfpathmoveto{\pgfpoint{4pt}{0pt} }
	}
	\state{final}
	{
		\pgfpathlineto{\pgfpointdecoratedpathlast}
	}
}
\tikzset{lddbond/.style={decorate,decoration=ddbond} }
\tikzset{rddbond/.style={decorate,decoration={ddbond,mirror} } }
\newcommand\namebond[4][5pt]{\chemmove{\path(#2)--(#3)node[midway,sloped,yshift=#1]{#4};} }
\newcommand\arcbetweennodes[3]{%
	\pgfmathanglebetweenpoints{\pgfpointanchor{#1}{center} }{\pgfpointanchor{#2}{center} }%
	\let#3\pgfmathresult}
\newcommand\arclabelA[6][stealth-stealth,shorten <=1pt,shorten >=1pt]{%
	\chemmove[red]{%
		\arcbetweennodes{#4}{#3}\anglestart \arcbetweennodes{#4}{#5}\angleend
		\draw[#1]([shift=(\anglestart:#2)]#4)arc(\anglestart:\angleend:#2);
		\pgfmathparse{(\anglestart+\angleend)/2}\let\anglestart\pgfmathresult
		\node[shift=(\anglestart:#2+1pt)#4,anchor=\anglestart+180,rotate=\anglestart-90,inner sep=0pt, outer sep=0pt]at(#4){#6};
	}
}
\newcommand\arclabelB[6][stealth-stealth,shorten <=1pt,shorten >=1pt]{%
	\chemmove[red]{%
		\arcbetweennodes{#3}{#4}\anglestart \arcbetweennodes{#5}{#4}\angleend
		\draw[#1]([shift=(\anglestart:-#2)]#4)arc(\anglestart:\angleend:-#2);
		\pgfmathparse{(\anglestart+\angleend)/2}
		\let\anglestart\pgfmathresult
		\node[shift=(\anglestart:-#2-1pt)#4,anchor=\anglestart+0,rotate=\anglestart+90,inner sep=0pt, outer sep=0pt]at(#4){#6};
	}
}
% Arguments:
% #1, #2, #3, #4, #5, #6: Labels as shown in the output figure
% #7: yshift for the arrow, positive for upwards shift, vice versa
% #8: radius of arc (default 0.333)
% #9: angle for arc (default 60)
\definearrow9{-X>}{%
	\CF@arrow@shift@nodes{#7}%
	\expandafter\draw\expandafter[\CF@arrow@current@style](\CF@arrow@start@node)--(\CF@arrow@end@node)node[midway](Xarrow@arctangent){};%
	\CF@ifempty{#8}
	{\def\CF@Xarrow@radius{0.333} }
	{\def\CF@Xarrow@radius{#8} }%
	\CF@ifempty{#9}%
	{\def\CF@Xarrow@absangle{60} }
	{\pgfmathsetmacro\CF@Xarrow@absangle{abs(#9)} }
	% Draw top arrow (start)
	\edef\CF@tmp@str{[\CF@ifempty{#1}{draw=none}{\unexpanded\expandafter{\CF@arrow@current@style} },-]}%
	\expandafter\draw\CF@tmp@str (Xarrow@arctangent)%
	arc[radius=\CF@compound@sep*\CF@current@arrow@length*\CF@Xarrow@radius,start angle=\CF@arrow@current@angle-90,delta angle=-\CF@Xarrow@absangle]node(Xarrow1@start){};
	% Draw bottom arrow (end)
	\edef\CF@tmp@str{[\CF@ifempty{#2}{draw=none}{\unexpanded\expandafter{\CF@arrow@current@style} },-CF]}%
	\expandafter\draw\CF@tmp@str (Xarrow@arctangent)%
	arc[radius=\CF@compound@sep*\CF@current@arrow@length*\CF@Xarrow@radius,%
	start angle=\CF@arrow@current@angle-90,%
	delta angle=\CF@Xarrow@absangle]%
	node(Xarrow1@end){};
	% Draw bottom arrow (start)
	\edef\CF@tmp@str{[\CF@ifempty{#4}{draw=none}{\unexpanded\expandafter{\CF@arrow@current@style} },-]}%
	\expandafter\draw\CF@tmp@str (Xarrow@arctangent)%
	arc[radius=\CF@compound@sep*\CF@current@arrow@length*\CF@Xarrow@radius,start angle=\CF@arrow@current@angle+90,delta angle=\CF@Xarrow@absangle]node(Xarrow2@start){};
	% Draw bottom arrow (end)
	\edef\CF@tmp@str{[\CF@ifempty{#5}{draw=none}{\unexpanded\expandafter{\CF@arrow@current@style} },-CF]}%
	\expandafter\draw\CF@tmp@str (Xarrow@arctangent)%
	arc[radius=\CF@compound@sep*\CF@current@arrow@length*\CF@Xarrow@radius,%
	start angle=\CF@arrow@current@angle+90,%
	delta angle=-\CF@Xarrow@absangle]%
	node(Xarrow2@end){};
	% Insert labels
	\pgfmathsetmacro\CF@tmp@stra{\CF@Xarrow@radius*cos(\CF@arrow@current@angle)<0?"-":"+"}%
	\pgfmathsetmacro\CF@tmp@strb{\CF@Xarrow@radius*cos(\CF@arrow@current@angle)<0?"+":"-"}%
	\ifdim\CF@Xarrow@radius pt>\z@
	\CF@arrow@display@label{#1}{0}\CF@tmp@stra{Xarrow1@start}{#2}{1}\CF@tmp@stra{Xarrow1@end}%
	\CF@arrow@display@label{#4}{0}\CF@tmp@strb{Xarrow2@start}{#5}{1}\CF@tmp@strb{Xarrow2@end}%
	\CF@arrow@display@label{#3}{0.5}\CF@tmp@stra\CF@arrow@start@node{}{}{}\CF@arrow@end@node%
	\CF@arrow@display@label{#6}{0.5}\CF@tmp@strb\CF@arrow@start@node{}{}{}\CF@arrow@end@node%
	\else
	\CF@arrow@display@label{#2}{0}\CF@tmp@stra{Xarrow1@start}{#1}{1}\CF@tmp@stra{Xarrow1@end}%
	\CF@arrow@display@label{#5}{0}\CF@tmp@strb{Xarrow2@start}{#4}{1}\CF@tmp@strb{Xarrow2@end}%
	\CF@arrow@display@label{#3}{0.5}\CF@tmp@stra\CF@arrow@start@node{}{}{}\CF@arrow@end@node%
	\CF@arrow@display@label{#6}{0.5}\CF@tmp@strb\CF@arrow@start@node{}{}{}\CF@arrow@end@node%
	\fi
}
\makeatother
\pagestyle{empty}
\thispagestyle{empty}
\begin{document}
\schemedebug{false}
\schemestart[][west]
	\chemname{\chemfig{O\textcolor{blue}{H}-[:-60,,1]-[::-60](-[::-60]OH)-[::60]-[::-60,,,1]OPO_3\mch[2]
	} }{\parbox{2.5cm}{\centering glycerol\\3-phosphate} }
	\arrow{-X>[\parbox{3cm}{\textcolor{red}{acyl-CoA 1}\\\chemfig[red]{CoA-[:-30]S-[::60](=[::60]O)-[::-60]R_1} }]%
		[\chemfig[red]{CoAS{\color{blue}H} }]%
		[]%
		[]%
		[]%
		[acyltransferase I]}[,2.75]
	\chemname{\chemfig{O(-[:30,,,,red](=[2,,,,red]\textcolor{red}{O})-[::-60,,,,red]\textcolor{red}{R_1})-[:-60]-[::-60](-[::-60]OH)-[::60]-[::-60,,,1]OPO_3\mch[2]}
	}{\parbox{4cm}{\centering lysophosphatidic acid\\(lysophosphatidate)} }
	\arrow{-X>[\parbox{3cm}{\textcolor{green}{acyl-CoA 2}\\\chemfig[green]{CoA-[:-30]S-[::60](=[::60]O)-[::-60]R_1} }]%
		[\chemfig[red]{CoAS{\color{blue}H} }]%
		[]%
		[]%
		[]%
		[acyltransferase II]}[,3.5]
	\chemname[-2.5em]{\chemfig{
		\textcolor{green}{R_2}-[:30,,,,green](=[2,,,,green]\textcolor{green}{O})-[::-60,,,,green]O-[0]
		(-[::-60]-[::-60,,,1]OPO_3\mch[2])
		-[::60]-[::60]O
		-[:30,,,,red](=[2,,,,red]\textcolor{red}{O})-[::-60,,,,red]\textcolor{red}{R_1}
	} }{\parbox{3.5cm}{\centering phosphatidic acid\\(phosphatidate)} }
\schemestop
\end{document}

Licensing

Public domain This image of a simple structural formula is ineligible for copyright and therefore in the public domain, because it consists entirely of information that is common property and contains no original authorship.

Captions

Add a one-line explanation of what this file represents

Items portrayed in this file

depicts

13 November 2017

image/svg+xml

File history

Click on a date/time to view the file as it appeared at that time.

Date/TimeDimensionsUserComment
current10:10, 13 November 2017813 × 222 (27 KB)KrishnavedalaUser created page with UploadWizard

The following page uses this file:

Metadata